Diagnosis of H. pylori infection


Various tests have been developed for the detection of H. pylori, each with their specific advantages and disadvantages. The available tests are generally divided into invasive tests, based on gastric specimens for histology, culture, or other methods, and noninvasive tests, based on peripheral samples, such as blood, breath samples, stools, urine, or saliva for detection of antibodies, bacterial antigens, or urease activity. The choice of a specific test for an individual patient depends on local experience and the clinical setting. In research protocols, a combination of two methods is often applied. In daily clinical practice, use of a single test is generally adequate, and most tests are sufficiently accurate to be used for this purpose. For routine diagnostic purposes, histology, urea breath testing, and culture are currently most often used, whereas the use of serology is most appropriate for large epidemiological studies. In hospital-based care, many patients undergo endoscopy, which is then combined with an invasive test for H. pylori. Otherwise, breath tests and serology are commonly used. For children, fecal antigen tests offer the opportunity to assess H. pylori status without the need for endoscopy or vena puncture.
Endoscopic Diagnostic Tests (Invasive tests)
In patients who have not been on a PPI (proton pump inhibitor)  within 1–2 wk or an antibiotic or bismuth within 4 wk of endoscopy, the rapid urease test (RUT) provides an accurate, inexpensive means of identifying H. pylori. For patients who have been taking a PPI, antibiotics, or bismuth, endoscopic testing for H. pylori should include biopsies from the gastric body and antrum for histology with or without rapid urease testing. Though culture or polymerase chain reaction (PCR) are the primary means by which antibiotic sensitivities can be determined, neither is widely available for clinical use and therefore, cannot be routinely recommended.
There are presently four biopsy-based diagnostic methods for H. pylori infection. These include the RUT, histology, culture, and PCR.

Rapid Urease Testing-
The RUT identifies active H. pylori infection through the organism’s urease activity. Gastric biopsies are obtained and placed into an agar gel or on a reaction strip containing  urea, a buffer, and a pH-sensitive indicator. In the presence of H. pylori’s urease, urea is metabolized to ammonia and bicarbonate leading to a pH increase in the microenvironment of the organism. A change in color of the pH sensitive indicator signifies the presence of active infection. Commercially available kits yield results in 1–24 h. Medications that reduce the density and/or urease activity of H. pylori, such as bismuth-containing compounds, antibiotics, or PPIs, can decrease the sensitivity of the RUT by up to 25%. Though controversial, acute ulcer bleeding at the time of testing may decrease the sensitivity and negative predictive value of the RUT. As a result of the patchy distribution of H. pylori infection after antibiotics or PPIs, it is recommended that biopsies for the RUT be obtained
from two sites, the body at the gastric anglularis and greater curvature of the antrum. The simplicity, low cost, and relatively rapid results make the RUT a practical and cost effective
means of testing for H. pylori in patients not taking antibiotics, bismuth, or PPIs who require upper endoscopy. Unfortunately, the usefulness of the RUT in routine clinical
practice has been compromised by the widespread use of PPIs as an empiric treatment for upper GI symptoms. As such, the RUT can rarely be used as a sole means of identifying H. pylori infection. More commonly, the RUT is combined with other endoscopic or non  endoscopic modalities to establish the presence or absence of this infection. No studies have been performed to define the duration of a PPI’s deleterious effects on the sensitivity of the RUT. Data with the urea breath test (UBT) suggest that PPI therapy can cause false-negative test results for 1–2 wk (68, 69). As the UBT and RUT rely upon the identification of H. pylori’s urease activity, it is reasonable to suggest that PPIs should be withheld for 1–2 wk before performance of the RUT. In situations where a patient has not taken a PPI for a period of 1–2 wk before their procedure, the sensitivity of the RUT is likely sufficient to justify its use as a single test for H. pylori.

Histology-
Histology has been considered by some to be the gold standard for detection of H. pylori. Unfortunately, histology is an imperfect gold standard as the detection of H. pylori relies upon a number of issues including the site, number, and size of gastric biopsies, method of staining, and the level of experience of the examining pathologist. A significant advantage of histology over other diagnostic methods is the ability to evaluate for pathologic changes associated with H. pylori infection such as inflammation, atrophy, intestinal metaplasia, and malignancy. Certainly the absence of chronic gastritis is a potent negative predictor for the presence of H. pylori infection. As the prevalence and density of H. pylori varies throughout the stomach, particularly in the face of medications that may reduce the density of H. pylori, multiple biopsies are needed for accurate diagnosis. It is therefore recommended that a minimum of three biopsies be obtained, one from the anglularis, one from the greater curvature of the corpus, and one from the greater curvature of the antrum, to maximize the diagnostic yield of histology. A recent study found that the addition of corpus biopsies to antral biopsies increased the detection of H. pylori infection by 10% when compared with antral biopsies alone. Similar to the RUT, the sensitivity of histology is significantly affected by the use of medications such as bismuth, antibiotics, and PPIs. Although widely available and capable of achieving sensitivity and specificity of >95%, the cost and need for properly trained.

Culture
Culture is another highly specific method for identifying active H. pylori infection. Conceptually, culture is attractive because it not only provides a means by which to identify infection, but also allows characterization of antimicrobial sensitivities. Unfortunately, culture is not as sensitive as RUT or histology. Furthermore, culturing techniques for H. pylori are demanding and costly and as a consequence, only available in a limited number of clinical laboratories. Nonculture-based means of determining antibiotic resistance are being developed but have not been adequately standardized and are not widely available.

Polymerase Chain Reaction
PCR is a DNA amplification technique that utilizes the rapid production of multiple copies of a target DNA sequence to identify H. pylori. This testing method is highly specific and may be more sensitive than other biopsy-based diagnostic techniques. A recent study found that PCR was able to detect H. pylori in approximately 20% of gastric biopsies with chronic gastritis but no identifiable organisms by histology PCR also provides a means of identifying mutations associated with antimicrobial resistance (78–80). Although presently restricted to the research arena, this method may some day provide a practical, reproducible method for antibiotic sensitivity testing, organism typing, and organism virulence testing.

Non endoscopic Diagnostic Tests (Non-Invasive tests)
Antibody testing is inexpensive and widely available. The UBTs and fecal antigen tests provide reliable means of identifying active H. pylori infection before antibiotic therapy. The UBT is the most reliable non endoscopic test to document eradication of H. pylori infection. The monclonal fecal antigen test provides another non endoscopic means of establishing H. pylori cure after antibiotic treatment. Testing to prove H. pylori eradication appears to be most accurate if performed at least 4 wk after the completion of antibiotic therapy.
There are currently three non endoscopic diagnostic testing methods for H. pylori infection. Antibody testing identifies an immunological reaction to the infection while the non endoscopic urease tests and fecal antigen test identify the presence of active H. pylori infection.

Antibody Tests
Antibody testing relies upon the detection of IgG antibodies specific to H. pylori in serum, whole blood, or urine. IgG antibodies to H. pylori typically become present approximately 21 days after infection and can remain present long after eradication. Antibodies to H. pylori can be quantitatively assessed using enzyme-linked immunosorbent assay(ELISA) and latex agglutination techniques or qualitatively assessed using office-based kits. The advantages of the antibody tests are their low cost, widespread availability, and rapid results. Unfortunately, several factors limit the usefulness of antibody testing in clinical practice. According to studies, the antibody test kits shows about 85% sensitivity and 79% specificity. One of the limitation is that antibody tests developed using antigens from one region of the world may not perform well when applied to patients in another part of the world suggesting that local validation may be necessary. Finally, antibody tests are of little benefit in documenting eradication as results can remain positive for years following successful cure of the infection.

Urea Breath Tests
The UBT, like the RUT, identifies active H. pylori infection by way of the organism’s urease activity. In the presence of H. pylori, the ingestion of urea, labeled with either the nonradioactive
isotope 13C or the radioactive isotope 14C, results in production of  labeled CO2, which can be quantitated in expired breath. Although the amount of radiation in the 14C UBT is less than daily background radiation exposure, the 13C test is preferred in children and pregnant females. Overall, the performance characteristics of both tests are similar with sensitivity and specificity typically exceeding 95% in most studies. Test reproducibility has been found to be excellent. The UBT also provides an accurate means of post treatment testing. Most tests utilize a citrate test meal (50–75 mg), which is administered before the labeled urea. A urease blood test, which relies upon the detection of labeled bicarbonate in a blood sample, also reliably identifies active H. pylori infection before and after treatment. As the non endoscopic urease tests rely upon the identification of H. pylori’s robust urease activity, test sensitivity is decreased by medications that reduce organism density or urease activity, including bismuth containing compounds, antibiotics and PPIs. It is currently recommended that bismuth and antibiotics be withheld for at least 28 days and a PPI for 7–14 days prior to the UBT. The UBT is more costly than the antibody tests or fecal antigen test. The expense of the UBT is largely driven by equipment costs and the cost of labeled urea. UBTs using lower dose 13C, which have recently been found to yield excellent performance characteristics, may in part address this issue.

Fecal Antigen Test
The fecal antigen test (FAT) identifies H. pylori antigen in the stool by enzyme immunoassay with the use of polyclonal anti-H. pylori antibody. Recently, a stool test utilizing a monoclonal
anti-H. pylori antibody has been evaluated. As both tests detect bacterial antigen(s) suggestive of ongoing infection, they can be used to screen for infection and as a means of establishing cure following therapy. Similar to the UBT, the sensitivity of the FAT is affected by the recent use of bismuth compounds, antibiotics, and PPIs. Recent studies also suggest that the specificity of the FAT is reduced in the setting of bleeding peptic ulcer disease and, for this reason, should not be the sole diagnostic test employed in this setting. Although the FAT is simple to administer and perform, issues slowing its widespread use include the unpleasantness of handling and storing stool, limited availability. The development of in-office stool tests is under way and may improve upon some of the practical limitations of the currently available tests. At present,
in-office tests have not been adequately validated in clinical trials. Based upon the available data, it is reasonable to conclude that the FAT can be used interchangeably with the UBT to identify H. pylori before antibiotic therapy. The polyclonal FAT has been less well validated than the UBT in the post treatment setting. Compared with the polyclonal test, the monoclonal FAT appears to provide a more reliable means of proving H. pylori eradication.